Computational Biology

In this project we develop accurate computational approaches to biological problems.

Tools

AStarix

AStarix is a fast and optimal sequence-to-graph aligner based on A* shortest path algorithm

Publications

2022

Fast and Optimal Sequence-to-Graph Alignment Guided by Seeds

Pesho Ivanov, Benjamin Bichsel, Martin Vechev

RECOMB 2022

Paper
Code

2020

AStarix: Fast and Optimal Sequence-to-Graph Alignment

Pesho Ivanov, Benjamin Bichsel, Harun Mustafa, André Kahles, Gunnar Rätsch, Martin Vechev

RECOMB 2020

Talk
Paper
Code